GeoScript Hub > Kidney Dataset

Start Here:

Introduction to the Data: README.docx

Sample Annotations: Kidney_Sample_Annotations.txt

Feature Annotations: Kidney_Feature_Annotations.txt

Probe Expression: Kidney_Raw_BioProbeCountMatrix.txt

Target Expression: Kidney_Raw_TargetCountMatrix.txt

Normalized Expression: Kidney_Q3Norm_TargetCountMatrix.txt

Data Loaded in R Objects and Example R Analysis:

Kidney R Dataset: KidneyDatasetR.zip

Example Analysis: KidneyDatasetRVignette.html

Images:

Slide images: ROI_reports.zip

High resolution single channel scans: high_res_scans.zip

H&E scans on serial secions: H_and_E.zip

Examples of Typical Analyses:

Cell Deconvolution:

Decon Results: Kidney_Spatial_Decon.txt

Cell Annotations: Cell_Types_for_Spatial_Decon.txt

Average Gene Expression: Young_kidney_cell_profile_matrix.csv

Gene Set Enrichment Analysis (GSEA):

Single Sample GSEA Results: Kidney_ssGSEA.txt